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Course profile

Fish, Fisheries & Aquaculture (BIOL3340)

Study period
Sem 1 2025
Location
St Lucia
Attendance mode
In Person

Course overview

Study period
Semester 1, 2025 (24/02/2025 - 21/06/2025)
Study level
Undergraduate
Location
St Lucia
Attendance mode
In Person
Units
2
Administrative campus
St Lucia
Coordinating unit
The Environment School

Fisheries and aquaculture represent the largest source of dietary protein and are pivotal in current food
security. The science of sustainable management of these precious resources is therefore critical in the global grand challenge of sustainable future food security. This course provides advanced level content in the biology and mathematics of fisheries and aquaculture, including fish reproductive biology and dispersal, mathematical modeling and stock assessment, fish nutrition, health and genetics in aquaculture and fisheries. Students will produce a cohesive, evidence-based scientific discourse on the potential placement of fish and fisheries, both capture and aquaculture, in future global food security and poverty alleviation. For this they will draw extensively on the relevant biological sciences and mathematics and show adaptability and application in a changing economic and ecological framework. Excellent students should be able to demonstrate substantial unexpected extension in their critical analysis and thinking and in how they apply their in-depth knowledge and communicate it to a broader scientifically literate audience.

The contribution of fisheries and aquaculture to current and future food security is substantial and currently represents the largest single source of dietary protein. The science of sustainable management of these precious resources is therefore critical in the Global Grand Challenge of sustainable food security.

Course requirements

Assumed background

Students should have completed BIOL2006 and MARS2001 before enrolling in this course.

Prerequisites

You'll need to complete the following courses before enrolling in this one:

MARS2001

Recommended prerequisites

We recommend completing the following courses before enrolling in this one:

BIOL2006 or BIOL2106

Incompatible

You can't enrol in this course if you've already completed the following:

BIOL3228

Course contact

Course staff

Lecturer

Timetable

The timetable for this course is available on the UQ Public Timetable.

Aims and outcomes

Fish, fisheries and aquaculture provides a basis of students to understand the technical background to sustainable management and operation of fisheries and aquaculture for future food security. Through workshops and laboratories, students should be able to explain in depth the strengths and limitations of of different practices and policies by drawing reference to the underlying biology and mathematics.

Learning outcomes

After successfully completing this course you should be able to:

LO1.

Link key features of aquatic animal biology (genetics, reproduction, movement, feeding, predator/prey) to natural environment and contained system productivity

LO2.

Use mathematical skills to model and predict performance of fisheries and aquaculture production systems

LO3.

Write accurate and balanced, well supported science for a general educated and scientifically literate audience appropriate to communicating a rationale argument around sustainable development

LO4.

Use online information sources to work case studies in small groups to solve problems based on food security and sustainability

LO5.

Effectively interpret and evaluate complex field-specific written material and articles

Assessment

Assessment summary

Category Assessment task Weight Due date
Paper/ Report/ Annotation Fisheries Biology/Ecology: Fish lab report 15%

1/04/2025 5:00 pm

Paper/ Report/ Annotation, Translation/ Interpretation Aquaculture assessment topics
  • Online
15% (5% each)

Nutrition: 8/04/2025 5:00 pm

Water quality: 15/04/2025 5:00 pm

Genetics: 13/05/2025 5:00 pm

Paper/ Report/ Annotation Fisheries Models: Fisheries workshop write-up 20%

30/05/2025 5:00 pm

Essay/ Critique, Presentation Final assignment
  • In-person
  • Online
50%

Take home Assignment: 9/06/2025 12:00 pm

In-person interview: Mon -Fri 11:00-13:30 16/06/2025

Assessment details

Fisheries Biology/Ecology: Fish lab report

Mode
Written
Category
Paper/ Report/ Annotation
Weight
15%
Due date

1/04/2025 5:00 pm

Task description

Short laboratory/workshop reports on the fish biology practical and workshop components.

This task has been designed to be challenging, authentic and complex. Whilst students may use AI and/or MT technologies, successful completion of assessment in this course will require students to critically engage in specific contexts and tasks for which artificial intelligence will provide only limited support and guidance.

A failure to reference generative AI or MT use may constitute student misconduct under the Student Code of Conduct.

To pass this assessment, students will be required to demonstrate detailed comprehension of their written submission independent of AI and MT tools.

Submission guidelines

Online submission by Turnitin only by the due date. No hard copy or assignment cover sheets required.

Deferral or extension

You may be able to apply for an extension.

The maximum extension allowed is 28 days. Extensions are given in multiples of 24 hours.

See the Additional assessment information section further below for information relating to extension and deferral applications

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

You are required to submit assessable items on time. If you fail to meet the submission deadline for any assessment item, then 10% of the maximum possible mark for the assessment item (assessment ‘marked from’ value) will be deducted as a late penalty for every day (or part day) late after the due date. For example, if you submit your assignment 1 hour late, you will be penalised 10%; if your assignment is 24.5 hours late, you will be penalised 20% (because it is late by one 24-hour period plus part of another 24-hour period). 

Aquaculture assessment topics

  • Online
Mode
Written
Category
Paper/ Report/ Annotation, Translation/ Interpretation
Weight
15% (5% each)
Due date

Nutrition: 8/04/2025 5:00 pm

Water quality: 15/04/2025 5:00 pm

Genetics: 13/05/2025 5:00 pm

Task description

Each topic weight 5%.

Water Quality: Provide a summary of the data from the on-line practical and answer the questions on the practical sheet.

Nutrition: Here you will assess fictional feed trial reports to rank them in order of completeness and to spot the missing information

Genetics: This assessment requires careful reading of scientific papers in order to answer a series of short answer questions. Some of the questions will be answerable directly from the papers. Others you will need to draw inference from the sum of information across multiple sources. This is test of comprehension rather than recall and will help to develop interpretation and explanation skills.

This assessment task evaluates students' abilities, skills and knowledge without the aid of generative Artificial Intelligence (AI) or Machine Translation (MT). Students are advised that the use of AI or MT technologies to develop responses is strictly prohibited and may constitute student misconduct under the Student Code of Conduct.

Submission guidelines

Online submission by Turnitin only by the due date. No hard copy or assignment cover sheets required.

Deferral or extension

You may be able to apply for an extension.

The maximum extension allowed is 28 days. Extensions are given in multiples of 24 hours.

See the Additional assessment information section further below for information relating to extension and deferral applications

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

You are required to submit assessable items on time. If you fail to meet the submission deadline for any assessment item, then 10% of the maximum possible mark for the assessment item (assessment ‘marked from’ value) will be deducted as a late penalty for every day (or part day) late after the due date. For example, if you submit your assignment 1 hour late, you will be penalised 10%; if your assignment is 24.5 hours late, you will be penalised 20% (because it is late by one 24-hour period plus part of another 24-hour period). 

Fisheries Models: Fisheries workshop write-up

Mode
Written
Category
Paper/ Report/ Annotation
Weight
20%
Due date

30/05/2025 5:00 pm

Task description

Write up fisheries modelling data workshop (~3 pages not including tables, figures and references).

This task has been designed to be challenging, authentic and complex. Whilst students may use AI and/or MT technologies, successful completion of assessment in this course will require students to critically engage in specific contexts and tasks for which artificial intelligence will provide only limited support and guidance.

A failure to reference generative AI or MT use may constitute student misconduct under the Student Code of Conduct.

To pass this assessment, students will be required to demonstrate detailed comprehension of their written submission independent of AI and MT tools.

Submission guidelines

Online submission by Turnitin only by the due date. No hard copy or assignment cover sheets required.

There are two items must be submitted, the report and the model spreadsheet. Two Turnitin links will be made available for these submissions in Blackboard

Deferral or extension

You may be able to apply for an extension.

The maximum extension allowed is 28 days. Extensions are given in multiples of 24 hours.

See the Additional assessment information section further below for information relating to extension and deferral applications

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

You are required to submit assessable items on time. If you fail to meet the submission deadline for any assessment item, then 10% of the maximum possible mark for the assessment item (assessment ‘marked from’ value) will be deducted as a late penalty for every day (or part day) late after the due date. For example, if you submit your assignment 1 hour late, you will be penalised 10%; if your assignment is 24.5 hours late, you will be penalised 20% (because it is late by one 24-hour period plus part of another 24-hour period).


Final assignment

  • In-person
  • Online
Mode
Oral, Written
Category
Essay/ Critique, Presentation
Weight
50%
Due date

Take home Assignment: 9/06/2025 12:00 pm

In-person interview: Mon -Fri 11:00-13:30 16/06/2025

Task description

Take home assignment: (Open essay question) - question provided to students in Week 12, to do at home and submit via Turnitin by the indicated due date.

In-person interview: (10 min, 2-4 questions from examiners, student to ask 2 in-depth questions on subject material of the essay). Interview performance may increase or decrease your essay grade based on knowledge of the field demonstrated in the interview. Interviews will be held during the second week of the examination period.

Submission guidelines

Take home assignment to be submitted online via Turnitin by the indicated due date. No hard copy or assignment cover sheets required. Take-home assignment must be submitted before the students can be scheduled for the in-person interview.

In-person interview will be arranged via Zoom. Students will be allocated a time during Exam Week 2. If the student is unable to attend the in-person interview as scheduled, please contact the course coordinator directly to arrange an alternative.

Deferral or extension

You may be able to apply for an extension.

The maximum extension allowed is 28 days. Extensions are given in multiples of 24 hours.

See the Additional assessment information section further below for information relating to extension and deferral applications.

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

You are required to submit assessable items on time. If you fail to meet the submission deadline for any assessment item, then 10% of the maximum possible mark for the assessment item (assessment ‘marked from’ value) will be deducted as a late penalty for every day (or part day) late after the due date. For example, if you submit your assignment 1 hour late, you will be penalised 10%; if your assignment is 24.5 hours late, you will be penalised 20% (because it is late by one 24-hour period plus part of another 24-hour period). 

Course grading

Full criteria for each grade is available in the Assessment Procedure.

Grade Description
1 (Low Fail)

Absence of evidence of achievement of course learning outcomes.

Course grade description: The minimum percentage required for this grade is: 0%

2 (Fail)

Minimal evidence of achievement of course learning outcomes.

Course grade description: The minimum percentage required for this grade is: 30%

3 (Marginal Fail)

Demonstrated evidence of developing achievement of course learning outcomes

Course grade description: The minimum percentage required for this grade is: 45%

4 (Pass)

Demonstrated evidence of functional achievement of course learning outcomes.

Course grade description: The minimum percentage required for this grade is: 50%

5 (Credit)

Demonstrated evidence of proficient achievement of course learning outcomes.

Course grade description: The minimum percentage required for this grade is: 65%

6 (Distinction)

Demonstrated evidence of advanced achievement of course learning outcomes.

Course grade description: The minimum percentage required for this grade is: 75%

7 (High Distinction)

Demonstrated evidence of exceptional achievement of course learning outcomes.

Course grade description: The minimum percentage required for this grade is: 85%

Supplementary assessment

Supplementary assessment is available for this course.

Should you fail a course with a grade of 3, you may be eligible for supplementary assessment. Refer to my.UQ for information on supplementary assessment and how to apply.

Supplementary assessment provides an additional opportunity to demonstrate you have achieved all the required learning outcomes for a course.

If you apply and are granted supplementary assessment, the type of supplementary assessment set will consider which learning outcome(s) have not been met.

Supplementary assessment can take any form (such as a written report, oral presentation, examination or other appropriate assessment) and may test specific learning outcomes tailored to the individual student, or all learning outcomes.

To receive a passing grade of 3S4, you must obtain a mark of 50% or more on the supplementary assessment.

Additional assessment information

Assessment Submission

It is the responsibility of the student to ensure the on time, correct and complete submission of all assessment items.

Please ensure you receive and save the submission confirmation for all submitted items, you may be asked to produce this as evidence of your submission.

Applications for Extensions to Assessment Due Dates

Extension requests are submitted online via my.UQ – applying for an extension. Extension requests received in any other way will not be approved. Additional details associated with extension requests, including acceptable and unacceptable reasons, may be found at my.UQ.

Please note:

  • Requests for an extension to an assessment due date must be submitted through your my.UQ portal and you must provide documentation of your circumstances, as soon as it becomes evident that an extension is needed. Your application must be submitted on or before the assessment item's due date and time.
  • Applications for extension can take time to be processed so you should continue to work on your assessment item while awaiting a decision. We recommend that you submit any completed work by the due date, and this will be marked if your application is not approved. Should your application be approved, then you will be able to resubmit by the agreed revised due date.
  • If an extension is approved, you will be notified via your my.UQ portal and the new date and time for submission provided. It is important that you check the revised date as it may differ from the date that you requested.
  • If the basis of the application is a medical condition, applications should be accompanied by a medical certificate dated prior to the assignment due date. If you are unable to provide documentation to support your application by the due date and time you must still submit your application on time and attach a written statement (Word document) outlining why you cannot provide the documentation. You must then upload the documentation to the portal within 24 hours.
  • If an extension is being sought on the basis of exceptional circumstances, it must be accompanied by supporting documentation (eg. Statutory declaration).
  • For extensions based on a SAP you may be granted a maximum of 7 days (if no earlier maximum timeframe applies). See the Extension or Deferral availability section of each assessment for timeframes. Your SAP is all that is required as documentation to support your application. However, additional extension requests for the assessment item will require the submission of additional supporting documentation e.g., a medical certificate. All extension requests must be received by the assessment due date and time.
  • An extension for an assessment item due within the teaching period in which the course is offered, must not exceed four weeks in total. If you are incapacitated for a period exceeding four weeks of the teaching period, you are advised to apply for Removal of Course.
  • If you have been ill or unable to attend class for more than 4 weeks, you are advised to carefully consider whether you are capable of successfully completing your courses this semester. You might be eligible to withdraw without academic penalty - seek advice from the Faculty that administers your program.
  • Students may be asked to submit evidence of work completed to date. Lack of adequate progress on your assessment item may result in an extension being denied.
  • There are no provisions for exemption from an assessment item within UQ rules. If you are unable to submit an assessment piece then, under special circumstances, you may be granted an exemption, but may be required to submit alternative assessment to ensure all learning outcomes are met.

Turnitin

All written assessment must be submitted via the appropriate Turnitin submission portal, which can be found within the Blackboard site. You are responsible for ensuring that your submission is complete. It is wise to re-enter the Turnitin portal and confirm that your submission is there and that it has not been altered during the submission process.

By submitting work through Turnitin you are deemed to have accepted the following declaration “I certify that this assignment is my own work and has not been submitted, either previously or concurrently, in whole or in part, to this University or any other educational institution, for marking or assessment”.

In the case of a Blackboard outage, please contact the Course Coordinator as soon as possible to confirm the outage with ITS.

Assessment/Attendance

Please notify your Course Coordinator as soon as you become aware of any issue that may affect your ability to meet the assessment/attendance requirements of the course. The my.UQ website and the Course Profile for your course also provide information about your course requirements, the rules associated with your courses and services offered by the University.

A note for repeating students in this course

Any student who enrols in a course must not be given exemption or partial credit from their previous attempt(s) for any individual piece of assessment. Instead, the student must successfully complete all of the learning activities and assessment items within the study period of enrolment (PPL Assessment - Procedures).

If the same assessment item is set from one year to the next, repeating students are allowed to submit the same work they submitted in previous attempts at the course. Where possible SENV recommends that you use the feedback you received in your last attempt to improve parts of the item where you lost marks. Resubmission of an altered or unaltered assessment item by a repeating student (where the same assessment has been set) will not be considered as self-plagiarism.

Plagiarism

You should be aware that the University employs purpose built software to detect plagiarism. It is very important that you understand clearly the practical meaning of plagiarism.

DEFINITION OF PLAGIARISM: Plagiarism is the act of misrepresenting as one's own original work the ideas, interpretations, words or creative works of another. These include published and unpublished documents, designs, music, sounds, images, photographs, computer codes and ideas gained through working in a group. These ideas, interpretations, words or works may be found in print and/or electronic media.

EXAMPLES OF PLAGIARISM:

1. Direct copying of paragraphs, sentences, a single sentence or significant parts of a sentence;

2. Direct copying of paragraphs, sentences, a single sentence or significant parts of a sentence with an end reference but without quotation marks around the copied text;

3. Copying ideas, concepts, research results, computer codes, statistical tables, designs, images, sounds or text or any combination of these;

4. Paraphrasing, summarising or simply rearranging another person's words, ideas, etc without changing the basic structure and/or meaning of the text;

5. Offering an idea or interpretation that is not one's own without identifying whose idea or interpretation it is;

6. A 'cut and paste' of statements from multiple sources;

7. Presenting as independent, work done in collaboration with others;

8. Copying or adapting another student's original work into a submitted assessment item.

Learning resources

You'll need the following resources to successfully complete the course. We've indicated below if you need a personal copy of the reading materials or your own item.

Library resources

Library resources are available on the UQ Library website.

Other course materials

If we've listed something under further requirement, you'll need to provide your own.

Required

Item Description Further Requirement
Laboratory coat A laboratory coat suitable for work in a PC2 laboratory own item needed

Learning activities

The learning activities for this course are outlined below. Learn more about the learning outcomes that apply to this course.

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Learning period Activity type Topic
Week 1

(24 Feb - 02 Mar)

Workshop

Course Intro/Fish Biol Workshop 1 (Andy & Ian)

Course Introduction. Seas of Slaughter: The fished, the fishers and their failure. Seafood survey planning exercise.

Practical

Fish biology practical 1 (Ian Tibbetts)

Frozen seafood survey data collation, analysis and develop Class Infographic

Week 2

(03 Mar - 09 Mar)

Workshop

Fish Biology workshop 2 (Ian Tibbetts)

Field trip to EcoSciences Precinct, Boggo Road: Queensland Fisheries Labs (Closed shoes)

Practical

Fish Biology Practical 2 (Ian Tibbetts)

Reproduction, development and growth, migration, recruitment

Week 3

(10 Mar - 16 Mar)

Workshop

Fish Biology Workshop 3 (Ian Tibbetts)

Fisheries ecology and sustainability

Week 4

(17 Mar - 23 Mar)

Workshop

Aquaculture 1 - Systems think tank (Andy Barnes)

Intro to SOLO method for marking answers to open questions.
Concepts: catering for aquatic animal biology in production systems - group work

Practical

Fish Biology Practical 3 (Ian Tibbetts)

The Fish Pit: general anatomy, diet, reproduction, length-weight relationship, otolith extraction. (Closed shoes/ Lab coat)

Week 5

(24 Mar - 30 Mar)

Workshop

Aquaculture 3 - Aquaculture nutrition (Andy Barnes)

Animal requirements. Essential, semi-essential nutrients. Ingredient sources and quality.

Workshop

Aquaculture 4 - Feed trials (Andy Barnes)

Concepts: Statistical models for trial design, power analysis, variables, scalability.

Week 6

(31 Mar - 06 Apr)

Workshop

Aquaculture 5 - Aquatic animal health (Andy Barnes)

Concepts: Social, environmental and economic effects of disease. Disease processes, immunology and disease resistance

Practical

Aquaculture 6 - Water Quality

Catch up prac to replace same prac scheduled in week 4, but moved due to TC Alfred adjustments. Please also note that there is aquatic animal health content online that you should be familiar (below)

Online content: Management of animal health in aquaculture. Vaccination principles and practice

Week 7

(07 Apr - 13 Apr)

Case-based learning

Aquaculture 7 - Case studies in fish health (Andy Barnes)

Group Workshop: Integration of disease process and ecosystem knowledge to identify cause and design preventative measures. Work up the case study, prepare to present the case to the rest of the class

Workshop

Aquaculture 8 - Genetics and breeding

Online content: Quantitative traits, marker assisted selection, genomic selection.
Workshop: design a simple breeding program for quantitative traits

Week 8

(14 Apr - 20 Apr)

Workshop

Aquaculture 9 - Genetics and breeding

Online content: Effective breeding number; hatchery practices; new technology
Workshop: The great GMO debate

Week 9

(28 Apr - 04 May)

Workshop

Fisheries modelling 1 (Anthony Richardson)

Trip to Rocky Point Aquaculture Grouper and Cobia Farm

Fieldwork

Aquaculture 10 - Field Trip

Why do we model fisheries? Density-dependent and density-independent growth. The exponential model.

Week 10

(05 May - 11 May)

Workshop

Fisheries Modelling 2 (Anthony Richardson)

The logistic model and maximum sustainable yield

Week 11

(12 May - 18 May)

Workshop

Fisheries Modelling 3 (Anthony Richardson)

The logistic model and stability

Week 12

(19 May - 25 May)

Workshop

Fisheries modelling 4 (Anthony Richardson)

The logistic model and stochasticity. Age-structured models

Policies and procedures

University policies and procedures apply to all aspects of student life. As a UQ student, you must comply with University-wide and program-specific requirements, including the:

Learn more about UQ policies on my.UQ and the Policy and Procedure Library.