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Course profile

Systems Pharmacology (BIOM3401)

Study period
Sem 1 2025
Location
St Lucia
Attendance mode
In Person

Course overview

Study period
Semester 1, 2025 (24/02/2025 - 21/06/2025)
Study level
Undergraduate
Location
St Lucia
Attendance mode
In Person
Units
2
Administrative campus
St Lucia
Coordinating unit
Biomedical Sciences School

Systems Pharmacology introduces students to the action of drugs on whole systems and provides an integrated approach to how drugs affect human physiology. Students will learn the effect of drugs on major physiological systems and how these effects can be beneficial or detrimental. Experimental experience is expanded to develop practical skills in core pharmacology methodology, drug measurements and drug effects.

BIOM3401 is designed to teach principles of the use of drugs as medicines to treat human diseases. The course examines a range of common human diseases, and describes how and why drugs are used, how they work and what adverse effects they can ellicit.

Course requirements

Assumed background

An understanding of basic biology, biochemistry, chemistry, and pharmacology, such as obtained by successful completion of first year chemistry; and first and second year biomedical science courses.

Prerequisites

You'll need to complete the following courses before enrolling in this one:

BIOM2402

Recommended prerequisites

We recommend completing the following courses before enrolling in this one:

BIOM2011

Incompatible

You can't enrol in this course if you've already completed the following:

BIOM3008

Course contact

Course staff

Lecturer

Timetable

The timetable for this course is available on the UQ Public Timetable.

Aims and outcomes

The course focuses on the major classes of drugs used in humans. It aims to provide an understanding of:
1) the mechanisms through which drugs exert therapeutic effects in major human diseases
2) the concept of selective toxicity and adverse effects of drugs
3) the roles of pharmacological agonists and antagonists in human diseases states
4) the importance of experimental evidence inᅠattaining knowledge and understanding of drugs used in therapy

Learning outcomes

After successfully completing this course you should be able to:

LO1.

Construct arguments based on evidence on the roles of pharmacological agents in disease

LO2.

Provide a strong basis for understanding of how drugs interact with the body and which possible limitations to drug therapy may exist

LO3.

Demonstrate an understanding of why drugs sometimes fail to work under specific circumstances, as observed in resistance, and mechanisms of common side-effects

LO4.

Define pharmacokinetic parameters, and how they are used in pharmacology and therapeutics

LO5.

Apply laboratory skills in experimental pharmacology to acquire data, especially relating to the evaluation of potential new clinical entities

LO6.

Write a report using scientific language and grammar, and to present and critically analyse experimental data as relevant to published scientific and clinical literature

LO7.

Reflect effectively on your learning experiences in pharmacology.

Assessment

Assessment summary

Category Assessment task Weight Due date
Examination In-Semester Examination
  • Hurdle
  • Identity Verified
  • In-person
  • Online
25%

In-semester Saturday

29/03/2025 - 12/04/2025

Will be held on either the 29/3/2025, 5/4/2025 or 12/4/2025.

Project Organ Bath Flowchart 2%

31/03/2025 - 7/04/2025

Start of practical - G1: 31/03/25; G2: 01/04/25; G3: 02/04/25 13:00

Paper/ Report/ Annotation Organ Bath Report 18%

28/04/2025 - 5/05/2025

G1: 28/04/25; G2: 29/04/25; G3: 30/04/25 13:00

Paper/ Report/ Annotation Pharmacokinetics of Alcohol 15%

20/05/2025 - 26/05/2025

G1: 26/05/25; G2: 20/05/25; G3: 21/05/25 13:00

Examination End of Semester Exam
  • Hurdle
  • Identity Verified
  • In-person
  • Online
40%

End of Semester Exam Period

7/06/2025 - 21/06/2025

A hurdle is an assessment requirement that must be satisfied in order to receive a specific grade for the course. Check the assessment details for more information about hurdle requirements.

Assessment details

In-Semester Examination

  • Hurdle
  • Identity Verified
  • In-person
  • Online
Mode
Written
Category
Examination
Weight
25%
Due date

In-semester Saturday

29/03/2025 - 12/04/2025

Will be held on either the 29/3/2025, 5/4/2025 or 12/4/2025.

Other conditions
Time limited.

See the conditions definitions

Learning outcomes
L01, L02, L03, L04, L05, L06

Task description

The exam will be an open book invigilated exam held on campus, undertaken via the Inspera eAssessment platform. Students will be required to bring a laptop to the exam that meets the device requirements for Inspera. It is important that you check before the exam that your laptop meets the device requirements for using the Inspera Assessment platform. If you do not own a suitable laptop, you can borrow one from the Library. The Library website Get familiar with Inspera provides the latest information for students about using Inspera. Further information about the exam will be provided on Blackboard. 

This In-semester exam will cover Modules 1 and 2 of the course (up to the last lecture of the Drug Treatment for Infectious Disease module given by Dr Lachlan Rash).

This exam will be of open-book and open-note format. This means that you may take any paper-based materials you like into the examination room. This includes course notes, assessment items, books and so on. 

Have your UQ student ID card available for all your exams. 

This assessment task is to be completed in-person. The use of Artificial Intelligence (AI) tools will not be permitted. Any attempted use of AI may constitute student misconduct under the Student Code of Conduct.

Hurdle requirements

You must obtain a combined PASS mark from the In-Semester exam and End-of-Semester exam

Exam details

Planning time 10 minutes
Duration 60 minutes
Calculator options

(In person) Casio FX82 series only or UQ approved and labelled calculator

Open/closed book Open Book examination
Exam platform Inspera
Invigilation

Invigilated in person

Submission guidelines

Deferral or extension

You may be able to defer this exam.

Late submission

No late submission permitted

Organ Bath Flowchart

Mode
Written
Category
Project
Weight
2%
Due date

31/03/2025 - 7/04/2025

Start of practical - G1: 31/03/25; G2: 01/04/25; G3: 02/04/25 13:00

Learning outcomes
L01, L02, L05, L06

Task description

This assessment item is the production of a flowchart for your practical and will constitute a breakdown of the experimental design. This should be based on the mechanisms of action of the drugs on the respective tissues and your approach in identifying your unknown(s). Further assessment details will be provided on Blackboard during the semester.

Artificial Intelligence (AI) provides emerging tools that may support students in completing this assessment task. Students may appropriately use AI in completing this assessment task. Students must clearly reference any use of AI in each instance. A failure to reference AI use may constitute student misconduct under the Student Code of Conduct.

Submission guidelines

You must submit your Assessment task, with the electronic coversheet available on the School's website (under Undergraduate - Assessment), to Turnitin by the submission deadline. You may submit drafts to Turnitin up to the due date, but you will only be able to submit once on or after the due date. You should also keep an electronic copy of every piece of assessment you submit.

Deferral or extension

You may be able to apply for an extension.

The maximum extension allowed is 28 days. Extensions are given in multiples of 24 hours.

Requests for extension must be made prior to the submission deadline, even if you are awaiting your supporting documentation. Late requests for extension will not be accepted for consideration unless you provide evidence of exceptional circumstances preventing you from submitting a request prior to the deadline, e.g., due to hospitalisation.

If you have been granted an extension, then the assessment specified late submission penalty in the table above will apply to submissions made after the due date of the approved extension.

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

If you are experiencing technical difficulties uploading your submission, please email a copy of your assessment to sbms@enquire.uq.edu.au so this can be logged on your behalf before the due date.

Organ Bath Report

Mode
Written
Category
Paper/ Report/ Annotation
Weight
18%
Due date

28/04/2025 - 5/05/2025

G1: 28/04/25; G2: 29/04/25; G3: 30/04/25 13:00

Learning outcomes
L01, L02, L05, L06, L07

Task description

This report will include strategy and data analysis from the two weeks of work, with deductive reasoning around the identity of unknown(s) in your assigned sample. Further assessment details will be provided on Blackboard during the semester.

Artificial Intelligence (AI) provides emerging tools that may support students in completing this assessment task. Students may appropriately use AI in completing this assessment task. Students must clearly reference any use of AI in each instance. A failure to reference AI use may constitute student misconduct under the Student Code of Conduct.

Submission guidelines

You must submit your Assessment task, with the electronic coversheet available on the School's website (under Undergraduate - Assessment), to Turnitin by the submission deadline. You may submit drafts to Turnitin up to the due date, but you will only be able to submit once on or after the due date. You should also keep an electronic copy of every piece of assessment you submit.

Deferral or extension

You may be able to apply for an extension.

The maximum extension allowed is 28 days. Extensions are given in multiples of 24 hours.

Requests for extension must be made prior to the submission deadline, even if you are awaiting your supporting documentation. Late requests for extension will not be accepted for consideration unless you provide evidence of exceptional circumstances preventing you from submitting a request prior to the deadline, e.g., due to hospitalisation.

If you have been granted an extension, then the assessment specified late submission penalty in the table above will apply to submissions made after the due date of the approved extension.

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

If you are experiencing technical difficulties uploading your submission, please email a copy of your assessment to sbms@enquire.uq.edu.au so this can be logged on your behalf before the due date.

Pharmacokinetics of Alcohol

Mode
Written
Category
Paper/ Report/ Annotation
Weight
15%
Due date

20/05/2025 - 26/05/2025

G1: 26/05/25; G2: 20/05/25; G3: 21/05/25 13:00

Learning outcomes
L01, L02, L04, L05, L06, L07

Task description

Lab Report consisting of data analysis of control and treated subjects. Further assessment details will be provided on Blackboard during the semester.

Artificial Intelligence (AI) provides emerging tools that may support students in completing this assessment task. Students may appropriately use AI in completing this assessment task. Students must clearly reference any use of AI in each instance. A failure to reference AI use may constitute student misconduct under the Student Code of Conduct.

Submission guidelines

You must submit your Assessment task, with the electronic coversheet available on the Schools website (http://www.uq.edu.au/sbms/undergraduate-forms), to Turnitin by the submission deadline. You may submit drafts to Turnitin up to the due date, but you will only be able to submit once on or after the due date. You should also keep an electronic copy of every piece of assessment you submit.

Deferral or extension

You may be able to apply for an extension.

The maximum extension allowed is 28 days. Extensions are given in multiples of 24 hours.

Requests for extension must be made prior to the submission deadline, even if you are awaiting your supporting documentation. Late requests for extension will not be accepted for consideration unless you provide evidence of exceptional circumstances preventing you from submitting a request prior to the deadline, e.g., due to hospitalisation.

If you have been granted an extension, then the assessment specified late submission penalty in the table above will apply to submissions made after the due date of the approved extension.

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

If you are experiencing technical difficulties uploading your submission, please email a copy of your assessment to sbms@enquire.uq.edu.au so this can be logged on your behalf before the due date.

End of Semester Exam

  • Hurdle
  • Identity Verified
  • In-person
  • Online
Mode
Written
Category
Examination
Weight
40%
Due date

End of Semester Exam Period

7/06/2025 - 21/06/2025

Other conditions
Time limited.

See the conditions definitions

Learning outcomes
L01, L02, L03, L04

Task description

The exam will be an open book invigilated exam held on campus, undertaken via the Inspera eAssessment platform. Students will be required to bring a laptop to the exam that meets the device requirements for Inspera. It is important that you check before the exam that your laptop meets the device requirements for using the Inspera Assessment platform. If you do not own a suitable laptop, you can borrow one from the Library. The Library website Get familiar with Inspera provides the latest information for students about using Inspera. Further information about the exam will be provided on Blackboard. 

Have your UQ student ID card available for all your exams. 

This is an open book examination. You will be notified regarding the materials that you are permitted to consult during the examination well ahead of your exam.

This examination must be completed individually. You are NOT permitted to share this exam with any un-authorised person. You must NOT make a copy of any of the material in the exam by any means.

This exam will be assessing all BIOM3401 lecture and practical material. Details of the examination format will be provided on the course Blackboard site during the semester, and covered in an online lecture.

This assessment task is to be completed in-person. The use of Artificial Intelligence (AI) tools will not be permitted. Any attempted use of AI may constitute student misconduct under the Student Code of Conduct.

Hurdle requirements

You must obtain a combined PASS mark from the In-Semester exam and End-of-Semester exam

Exam details

Planning time 10 minutes
Duration 120 minutes
Calculator options

(In person) Casio FX82 series only or UQ approved and labelled calculator

Open/closed book Open Book examination
Exam platform Inspera
Invigilation

Invigilated in person

Submission guidelines

Deferral or extension

You may be able to defer this exam.

Late submission

No late submission permitted

Course grading

Full criteria for each grade is available in the Assessment Procedure.

Grade Cut off Percent Description
1 (Low Fail) 0 - 29

Absence of evidence of achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment tasks of 0% - 29%.

2 (Fail) 30 - 44

Minimal evidence of achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment tasks of 30% - 44%.

3 (Marginal Fail) 45 - 49

Demonstrated evidence of developing achievement of course learning outcomes

Course grade description: A cumulative score for all intra-semester and end of semester assessment tasks of 45% - 49% OR A cumulative score for all intra-semester and end of semester assessment tasks of 50% or greater,ᅠbut less than a pass in any of the assessment hurdle outlined below in "Additional Course Grading Information"

4 (Pass) 50 - 64

Demonstrated evidence of functional achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment tasks of 50% - 64%ᅠAND successful completion of assessment hurdle as outlined below in "Additional Course Grading Information"

5 (Credit) 65 - 74

Demonstrated evidence of proficient achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment tasks of 65% - 74%ᅠAND successful completion of assessment hurdle as outlined below in "Additional Course Grading Information"

6 (Distinction) 75 - 84

Demonstrated evidence of advanced achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment tasks of 75% - 84%ᅠAND successful completion of assessment hurdle as outlined below in "Additional Course Grading Information"

7 (High Distinction) 85 - 100

Demonstrated evidence of exceptional achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment tasks of 85% - 100%ᅠAND successful completion of assessment hurdle as outlined below in "Additional Course Grading Information"

Additional course grading information

To pass this course you must meet the following hurdle requirement:

  • You must obtain a combined PASS mark from the In-Semester exam and End-of-Semester exam

If a student obtains an overall percentage greater than the cut-offs set to achieve a 4 or higher for the course and does NOT successfully complete the hurdle, they are unable to achieve a grade higher than a 3 (failing grade) for the course.

Supplementary assessment

Supplementary assessment is available for this course.

The supplementary assessment may be in the form of an exam (written or oral), a written submission or another assessment as determined by the Course Coordinator. It may be made up of multiple components and will allow students to meet any outstanding Learning Outcomes. The final grade awarded will be based on the results of the supplementary assessment only and a passing grade will be awarded only if a student passes the supplementary assessment.

Additional assessment information

Information onᅠapplying for an assessment extensionᅠcan be found on theᅠApplying for an extension website.

Information onᅠapplying for a deferred examᅠcan be found on theᅠDeferring an exam website.

Information onᅠassessment re-mark requestsᅠcan be found on theᅠQuerying a resultᅠwebsite.

Learning resources

You'll need the following resources to successfully complete the course. We've indicated below if you need a personal copy of the reading materials or your own item.

Library resources

Find the required and recommended resources for this course on the UQ Library website.

Other course materials

If we've listed something under further requirement, you'll need to provide your own.

Required

Item Description Further Requirement
Required - Personal Protective Equipment (PPE) Clean white laboratory coat, safety glasses and fully enclosed shoes. Students will not be permitted in the laboratory without these items. Each student must have their UQ Student Identification Card visibly displayed above the waist. While public health directions no longer require face masks to be worn, they are recommended when you cannot physically distance, you are a vulnerable person or caring for vulnerable people. Please note that cloth masks are not acceptable in laboratory classes in the School of Biomedical Sciences. own item needed

Learning activities

The learning activities for this course are outlined below. Learn more about the learning outcomes that apply to this course.

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Learning period Activity type Topic
Lecture

Weeks 1-2: Module 1. Disposition of Drugs in Humans [Kaminskas]

Wk 1-Mon: L1-2: ADME summary and formulation & Compartment models and area under the curve calculations

Wk 1-Wed: L3: Protein binding, bioavailability and first pass metabolism

Wk 2-Mon: L4-5: Volume of distribution and clearance & Patient dosing calculations and practice questions

Wk 2-Wed: L6: When PK gets "weird"?

Learning outcomes: L01, L02, L03, L04

Lecture

Weeks 3-4: Module 2. Drug Treatment for Infectious Diseases 1 [Rash]

Wk 3-Mon: L1-2: Introduction to antibacterials and resistance, Antibiotic mechanisms and treatment

Wk 3-Wed: L3: Antibacterials continued.

Wk 4-Mon: L4-5: Antifungals and Antivirals

Wk 4-Wed: no lecture

Learning outcomes: L01, L02, L03

Lecture

Weeks 5-6: Module 3. Drug Treatment for Inflam. Diseases [Woodruff] & [Rash]

Wk 5-Mon: L1-2: Treatment of IBD and RA (NSAIDs and SAIDs) & Treatment of IBD and RA (disease modifiers)

Wk 5-Wed: L3: Asthma

Wk 6-Mon: L4-5: GI: Gastric reflux and ulcers & Emesis, constipation and diarrhoea

Wk 6-Wed: no lecture

Learning outcomes: L01, L02, L03

Practical

Weeks 5-7: Prac 1: Organ bath unknown drug prac.

Week 5 - Planning: This session is for planning your strategy around the Identification of Unknowns (IOU) experiments. (Mon G1, Tue G2, Wed G3)

Week 6 - Rat tissue: Experiments for analysis of the effects of compounds on tissues. (Mon G1, Tue G2, Wed G3)

Week 7 - Guinea pig tissue: Experiments for analysis of the effects of compounds on tissues. (Mon G1, Tue G2, Wed G3)

Learning outcomes: L05, L06, L07

Lecture

Weeks 7-8: Module 4. Drug Treatment for Cancer [Fung]

Wk 7-Mon: L1-2: Conventional Chemotherapy & Antibodies and kinase inhibitors (nanomeds)

Wk 7-Wed: no lecture

Wk 8-Mon: L3-4: Drug Treatments for Cancer 3 and 4

Wk 8-Wed: no lecture

Learning outcomes: L01, L02, L03

Lecture

MS BREAK - NO CLASSES

Lecture

Weeks 9-10: Module 5. Drug Treatment for CV disease [Woodruff] & [Manchadi]

Wk 9-Mon: L1-2: Direct-acting antihypertensives, Indirect-acting antihypertensives

Wk 9-Wed: L. 3: Atherosclerosis and lipid-lowering drugs

Wk 10-Mon: Labour Day Hol - no lecture

Wk 10-Wed: L4: Pharmacology of heart failure

Learning outcomes: L01, L02, L03

Practical

Weeks 9-11: Prac 2. Alcohol pharmacokinetics.

Week 9 Prelab session (Mon G1, Tue G2, Wed G3)

Week 10 Prac (Tue G2, Wed G3)

Week 11 Prac (Mon G1) 

Learning outcomes: L04, L05, L06, L07

Lecture

Weeks 11-12: Module 6. Drug Treatment for Neurodeg. Diseases and Mental Health [Manchadi]

Wk 11-Mon: L1-2: Mechanisms of Cell Death: Parkinson's, Huntington's and Alzheimer's diseases.

Wk 11-Wed: L. 3: Depression

Wk 12-Mon: L4-5: Anxiety, Schizophrenia and Psychoses

Learning outcomes: L01, L02, L03

Workshop

Week 12: Workshop. Parkinson's Diesease

(Mon G1, Tue G2, Wed G3)

Lecture

Week 12: EOS Exam Prep and Closing Comments [Rash] [Manchadi]

Wk 12-Wed: EOS Exam Preparation

Lecture

Week 13: NO LECTURES

Policies and procedures

University policies and procedures apply to all aspects of student life. As a UQ student, you must comply with University-wide and program-specific requirements, including the:

Learn more about UQ policies on my.UQ and the Policy and Procedure Library.

School guidelines

Your school has additional guidelines you'll need to follow for this course: