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Course profile

Microbes & Human Health (MICR3001)

Study period
Sem 2 2025
Location
St Lucia
Attendance mode
In Person

Course overview

Study period
Semester 2, 2025 (28/07/2025 - 22/11/2025)
Study level
Undergraduate
Location
St Lucia
Attendance mode
In Person
Units
2
Administrative campus
St Lucia
Coordinating unit
Chemistry & Molec Biosciences

This course describes the importance of infectious diseases in individuals, populations and communities. It covers the way microbes cause disease (pathogenesis), how they are transmitted, their spread within the population and mechanisms of control. Core topics include the epidemiology and pathogenesis of viral, bacterial and fungal infections, clinical microbiology and emerging infectious diseases. Each facet of the content will be presented in contemporary science contexts by experts in the field. The course requires the completion of a second year microbiology course (MICR2000 or equivalent) and is a prerequisite for those students wishing to obtain a major in microbiology.

Microbes that cause infectious diseases in humans and animals are of enormous significance to global human health. MICR3001 Microbes & Human Health is a third level course that explores the mechanisms by which bacteria, viruses and fungi cause disease in humans. The course also examines how these microbes are transmitted, the impact of antimicrobial resistance on human infectious diseases, and the most current methods of treatment and vaccination.

Course requirements

Assumed background

Students will have completed appropriate subjects atᅠsecond year level and have good written and communication skills.

Prerequisites

You'll need to complete the following courses before enrolling in this one:

(MICR2000 OR MICR2900)

Recommended prerequisites

We recommend completing the following courses before enrolling in this one:

[BIOC2000 or BIOC2900] + BIOL2200 or BIOL2900] + [BIOL2202 or BIOL2902]

Incompatible

You can't enrol in this course if you've already completed the following:

MICR3901 (co-taught)

Course contact

Course staff

Lecturer

Guest lecturer

Timetable

The timetable for this course is available on the UQ Public Timetable.

Additional timetable information

Check your online timetable regularly.

Aims and outcomes

This course aims to describe the importance of infectious diseases in individuals, populations and communities. It covers the way microbes (bacteria, viruses and fungi) cause disease (pathogenesis), how they are transmitted, their spread within the population, andᅠmechanisms of disease control.

Assessment

Assessment summary

Category Assessment task Weight Due date
Essay/ Critique, Presentation PBLs
  • Identity Verified
  • In-person
50%

PBL1 Bacterial Infections Presentation 14/08/2025 11:00 am

PBL1 Bacterial Infections Report 21/08/2025 2:00 pm

PBL2 Viral Infections Presentation 4/09/2025 11:00 am

PBL2 Viral Infections Report 11/09/2025 2:00 pm

PBL3 Fungal Infections Presentation 25/09/2025 11:00 am

Examination Final Exam
  • Hurdle
  • Identity Verified
  • In-person
50%

End of Semester Exam Period

8/11/2025 - 22/11/2025

A hurdle is an assessment requirement that must be satisfied in order to receive a specific grade for the course. Check the assessment details for more information about hurdle requirements.

Assessment details

PBLs

  • Identity Verified
  • In-person
Mode
Oral, Written
Category
Essay/ Critique, Presentation
Weight
50%
Due date

PBL1 Bacterial Infections Presentation 14/08/2025 11:00 am

PBL1 Bacterial Infections Report 21/08/2025 2:00 pm

PBL2 Viral Infections Presentation 4/09/2025 11:00 am

PBL2 Viral Infections Report 11/09/2025 2:00 pm

PBL3 Fungal Infections Presentation 25/09/2025 11:00 am

Task description

PBL1: Bacterial Infections (20%)

Students will be assessed on the following criteria:

PowerPoint presentation given in tutorial (10% weighting).

Written report (500 words maximum) (10% weighting). 

PBL2: Viral Infections (20%)

Students will be assessed on the following criteria:

PowerPoint presentation given in tutorial (10% weighting).

Written report (500 words maximum) (10% weighting). 

PBL3: Fungal Infections (10%)

Students will be assessed on a PowerPoint presentation on selected topic (10% weighting).

Use of Artificial Intelligence (AI) and Machine Translation (MT)

This task has been designed to be challenging, authentic and complex. Whilst students may use AI and/or MT technologies, successful completion of assessment in this course will require students to critically engage in specific contexts and tasks for which artificial intelligence will provide only limited support and guidance.

A failure to reference generative AI or MT use may constitute student misconduct under the Student Code of Conduct.

To pass this assessment, students will be required to demonstrate detailed comprehension of their written submission independent of AI and MT tools. 

Submission guidelines

Submit your Bacterial PBL 1 report through the course Turnitin submission point in Blackboard. Before submitting your assessment item to Turnitin please name your file in the following way. FAMILY NAME_GivenName_StudentID_CourseCode_AssignmentName For example: Bob Smith (ID: 54329876) would name his ABCD1234 essay 1 in the following way. SMITH_Bob_54329876_ABCD1234_Essay1

Submit your Virology PBL 2 report through the course Turnitin submission point in Blackboard. Before submitting your assessment item to Turnitin please name your file in the following way. FAMILY NAME_GivenName_StudentID_CourseCode_AssignmentName For example: Bob Smith (ID: 54329876) would name his ABCD1234 essay 2 in the following way. SMITH_Bob_54329876_ABCD1234_Essay2

Deferral or extension

You may be able to apply for an extension.

Applications for extension

Extension applications must be received no later than 24 hours after the published assessment due date and time.

Read the information contained in the following links carefully before submitting an application for extension to assessment due date.

For guidance on applying for an extension, information is available here.

For the policy relating to extensions, information is available here (Part D).

Information on medical certificates

Please note the University's requirements for medical certificates here.

Late submission

A penalty of 10% of the maximum possible mark will be deducted per 24 hours from time submission is due for up to 7 days. After 7 days, you will receive a mark of 0.

You are required to submit assessable items on time. If you fail to meet the submission deadline for any assessment item, then 10% of the maximum possible mark for the assessment item (assessment ‘marked from’ value) will be deducted as a late penalty for every day (or part day) late after the due date. For example, if you submit your assignment 1 hour late, you will be penalised 10%; if your assignment is 24.5 hours late, you will be penalised 20% (because it is late by one 24-hour period plus part of another 24-hour period). 10% will be deducted per day for up to 7 calendar days, at which point your submission will receive a mark of zero (0) unless an extension has been approved.

In most instances one or more hurdles will apply to your assessment item so you will need to submit it to fulfil the requirements of the course regardless of how late it is and the mark you are likely to be awarded.

Final Exam

  • Hurdle
  • Identity Verified
  • In-person
Mode
Written
Category
Examination
Weight
50%
Due date

End of Semester Exam Period

8/11/2025 - 22/11/2025

Task description

The examination samples knowledge from ALL Modules. More information will be provided during teaching activities and/or on Blackboard. 

Use of Artificial Intelligence (AI) and Machine Translation (MT)

This assessment task is to be completed in-person. The use of generative Artificial Intelligence (AI) or Machine Translation (MT) tools will not be permitted. Any attempted use of AI or MT may constitute student misconduct under the Student Code of Conduct.

Hurdle requirements

See ADDITIONAL COURSE GRADING INFORMATION for the hurdle/s relating to this assessment item.

Exam details

Planning time 10 minutes
Duration 180 minutes
Calculator options

No calculators permitted

Open/closed book Closed book examination - no written materials permitted
Exam platform Paper based
Invigilation

Invigilated in person

Submission guidelines

Deferral or extension

You may be able to defer this exam.

Course grading

Full criteria for each grade is available in the Assessment Procedure.

Grade Description
1 (Low Fail)

Absence of evidence of achievement of course learning outcomes.

Course grade description: Some engagement with the assessment tasks; however no demonstrated evidence of understanding of the concepts in the field of study. The minimum percentage required for this grade is: 0%

2 (Fail)

Minimal evidence of achievement of course learning outcomes.

Course grade description: Inability to apply knowledge and skills. The minimum percentage required for this grade is: 30%

3 (Marginal Fail)

Demonstrated evidence of developing achievement of course learning outcomes

Course grade description: Emerging ability to apply knowledge and skills. The minimum percentage required for this grade is: 45%

4 (Pass)

Demonstrated evidence of functional achievement of course learning outcomes.

Course grade description: Acceptable application of knowledge and skills. The minimum percentage required for this grade is: 50%

5 (Credit)

Demonstrated evidence of proficient achievement of course learning outcomes.

Course grade description: Effective application of knowledge and skills. The minimum percentage required for this grade is: 65%

6 (Distinction)

Demonstrated evidence of advanced achievement of course learning outcomes.

Course grade description: Extensive application of knowledge and skills. The minimum percentage required for this grade is: 75%

7 (High Distinction)

Demonstrated evidence of exceptional achievement of course learning outcomes.

Course grade description: Original, novel and/or creative application of knowledge and skills. The minimum percentage required for this grade is: 85%

Additional course grading information

Assessment Hurdles

In order to pass this course, you must meet ALL of the following requirements (if you do not meet these requirements, the maximum grade you will receive will be a 3):

1. You must obtain an overall mark of 40% or more on the end of semester exam.

Supplementary assessment

Supplementary assessment is available for this course.

Should you fail a course with a grade of 3, you may be eligible for supplementary assessment. Refer to my.UQ for information on supplementary assessment and how to apply.

Supplementary assessment provides an additional opportunity to demonstrate you have achieved all the required learning outcomes for a course.

If you apply and are granted supplementary assessment, the type of supplementary assessment set will consider which learning outcome(s) have not been met.

Supplementary assessment can take any form (such as a written report, oral presentation, examination or other appropriate assessment) and may test specific learning outcomes tailored to the individual student, or all learning outcomes.

To receive a passing grade of 3S4, you must obtain a mark of 50% or more on the supplementary assessment.

Additional assessment information

Assessment Submission

It is the responsibility of the student to ensure the on time, correct and complete submission of all assessment items.

Students are responsible for retaining evidence of submission by the due date for all assessment items, in the required form (for example, screenshot, email, photo, and an unaltered copy of submitted work).

In the case of a Blackboard outage, contact the Course Coordinator as soon as possible to confirm the outage with ITS.

Assessment/Attendance

Notify your Course Coordinator as soon as you become aware of any issue that may affect your ability to meet the assessment/attendance requirements of the course. The my.UQ website and the Course Profile (CP) for your course provide information about your course requirements, the rules associated with your courses and services offered by the University.

A note for repeating students in this course

Only learning activities and/or assessment items completed during the study period of enrolment, including any approved extensions, may contribute to your grade in this course. The whole or partial use of assessment items previously submitted for the same course, for a course at any institution, or for published material, is not permitted without written permission of the Course Coordinator.

Important Note

Turnitin is to be used for assignments/laboratory reports to check for plagiarism. Penalties can be severe for plagiarism.

The University has adopted the following definition of plagiarism: Plagiarism is the act of misrepresenting as one's own original work the ideas, interpretations, words or creative works of another either intentionally or unintentionally. These include published and unpublished documents, designs, music, sounds, images, photographs, computer codes and ideas gained through working in a group. These ideas, interpretations, words or works may be found in print and/or electronic media.

Students should read the UQ Student Integrity and Misconduct Policy.

Learning resources

You'll need the following resources to successfully complete the course. We've indicated below if you need a personal copy of the reading materials or your own item.

Library resources

Library resources are available on the UQ Library website.

Additional learning resources information

Lecture notes, practical books, websites.

Blackboard

Additional material (including the Turnitin portal) may be found on the Blackboard site for MICR3001 at learn.uq.edu.au

Check the Announcements section of the Blackboard site regularly for information updates.

Learning activities

The learning activities for this course are outlined below. Learn more about the learning outcomes that apply to this course.

Filter activity type by

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Learning period Activity type Topic
Multiple weeks

From Week 1 To Week 3
(28 Jul - 17 Aug)

Lecture

Module 1: Bacterial infections

Bacterial infections

Multiple weeks

From Week 2 To Week 9
(04 Aug - 28 Sep)

Tutorial

Problem Based Learning activities

Problem Based Learning activities.

Multiple weeks

From Week 4 To Week 6
(18 Aug - 07 Sep)

Lecture

Module 2: Viral infections

Viral infections

Multiple weeks

From Week 7 To Week 8
(08 Sep - 21 Sep)

Lecture

Module 3: Fungal infections

Fungal infections

Multiple weeks

From Week 10 To Week 12
(06 Oct - 26 Oct)

Lecture

Module 4: Clinical Microbiology and the Future

Clinical Microbiology and the Future

Policies and procedures

University policies and procedures apply to all aspects of student life. As a UQ student, you must comply with University-wide and program-specific requirements, including the:

Learn more about UQ policies on my.UQ and the Policy and Procedure Library.