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Course profile

The Integrated Brain (NEUR3002)

Study period
Sem 2 2024
Location
St Lucia
Attendance mode
In Person

Course overview

Study period
Semester 2, 2024 (22/07/2024 - 18/11/2024)
Study level
Undergraduate
Location
St Lucia
Attendance mode
In Person
Units
2
Administrative campus
St Lucia
Coordinating unit
Biomedical Sciences School

Lectures & seminars illustrating how brain systems work in an integrated fashion to extract high level sensory information, plan & control movement, form memories, cope with emotional & physical stress, & adapt to drugs of addiction.

This course is composed of several major themes that focus on how systems in the brain work together to extract high-level sensory information, plan and control movement, lay down memories, and the central mechanisms that give rise to and cope with cognition, emotion,ᅠtrauma, andᅠdisease.ᅠ The course builds on previous cellular and systems physiology and neuroscience knowledge to develop a high-level conception of how systems of neurons work together to respond to changes in the organism, from animals to humans. In addition to lectures on these themes, students will learn in detail about a particular brain system by critically analysing and presenting primary scientific literature in a group seminar setting.

Course requirements

Assumed background

Reasonable knowledge (commensurate with learning objectives in prerequisite courses) of how groups of cells communicate in the central and peripheral nervous system and how these cells can form functional systems. It is also expected that students will be familiar with the basic properties of neurons and basic central nervous system anatomy.

Prerequisites

You'll need to complete the following courses before enrolling in this one:

BIOM2011

Recommended prerequisites

We recommend completing the following courses before enrolling in this one:

BIOL2200 + BIOM2012

Course contact

Course staff

Lecturer

Dr John Lee

Guest lecturer

Professor Gerhard Rammes

Timetable

The timetable for this course is available on the UQ Public Timetable.

Aims and outcomes

This course is composed of ten major themes that focus on how systems in the brain work together to extract high level sensory information, to plan and control movement or lay down memories, and the central mechanisms that give rise to and cope with, stress, emotion, mood, injury, homeostasis and addiction.

This integrated approach is designed to address some of the areas not previously covered in the undergraduate curriculum, to allow for individual active learning in an area of the student's choice and to leave the student with the view that an individual is more than the sum of their channels, circuits and systems.

Learning outcomes

After successfully completing this course you should be able to:

LO1.

Draw together the neuroscience streams encountered by the student in previous undergraduate disciplines.

LO2.

Provide an integrated view of how neural systems interact to achieve a goal directed outcome.

LO3.

Make an in-depth analysis of the published scientific literature.

LO4.

Make an oral and visual presentation of scientific results using appropriate information and communication techniques.

LO5.

Justify a scientific position based on literature research and scientific knowledge.

LO6.

Describe the anatomy and cell types which mediate the immune response in brain tissue and the role of this response in brain degeneration and inflammation.

LO7.

Describe the functional anatomy of the cortex, cortical microcircuits, motor circuits which control movement, the mirror neuron system, and the scientific basis for this knowledge.

LO8.

Describe the key features of the epileptic state, what can cause epilepsy and how the brain adapts to this state; describe the brain circuits involved in epilepsy, and how knowledge of epilepsy-induced changes in brain state can guide treatment for epilepsy.

LO9.

Describe how the brain responds to injury at a cellular and molecular level, develop a broad understanding of the hurdles and challenges that need to be overcome for brain repair and provide a critical and informed judgement on the value and importance of findings from experimental research in the area of neurotrauma.

LO10.

Describe how the nervous system processes somatosensory inputs.

LO11.

Describe the neuroanatomy and neurophysiology of the brain regions involved in giving rise to consciousness and our sense of self.

LO12.

Describe the neurobiology of psychosis in humans and animal models.

LO13.

Describe the principles of brain connectivity, including axonal development, pathfinding, large scale study of the whole brain connectome in animals and humans, and neurological conditions that arise from defects in connectivity.

LO14.

Describe how the brain processes visual inputs.

LO15.

Describe the brain systems and neurotransmitters involved in central regulation of mood and mood disorders.

LO16.

Describe how the nervous system generates periodic phenomena and how these central timekeepers regulate body functions.

Assessment

Assessment summary

Category Assessment task Weight Due date
Examination In-Semester Exam
  • Identity Verified
  • In-person
  • Online
28%

In-semester Saturday

31/08/2024 - 14/09/2024

Participation/ Student contribution Journal Club Participation
  • In-person
5%

31 July 23 - 27 Oct 23

Presentation Journal Club Oral Presentation
  • In-person
18%

31 July 23 - 27 Oct 23

Examination End of Semester Exam
  • Identity Verified
  • In-person
  • Online
49%

End of Semester Exam Period

2/11/2024 - 16/11/2024

Assessment details

In-Semester Exam

  • Identity Verified
  • In-person
  • Online
Mode
Written
Category
Examination
Weight
28%
Due date

In-semester Saturday

31/08/2024 - 14/09/2024

Learning outcomes
L01, L02, L06, L07, L08, L10

Task description

  • The in-semester examination will be scheduled by central exams and will cover the content of the lectures in Weeks 1, to 5. 
  • The exam will be a closed book invigilated exam held on campus, undertaken via the Inspera eAssessment platform. Students will be required to bring a laptop to the exam that meets the device requirements for Inspera. It is important that you check before the exam that your laptop meets the device requirements for using the Inspera Assessment platform. If you do not own a suitable laptop, you can borrow one from the Library. The Library website Get familiar with Inspera provides the latest information for students about using Inspera.  Further information about the exam will be provided on Blackboard, and practice opportunities will be available throughout the semester.
  • Have your UQ student ID card available for all your exams. 
  • Further details of the assessment format and marking criteria will be provided on Blackboard during the semester.
  • This assessment task is to be completed in-person. The use of Artificial Intelligence (AI) tools will not be permitted. Any attempted use of AI may constitute student misconduct under the Student Code of Conduct.

Exam details

Planning time 10 minutes
Duration 60 minutes
Calculator options

No calculators permitted

Open/closed book Closed Book examination - no written materials permitted
Exam platform Inspera
Invigilation

Invigilated by Inspera

Submission guidelines

Deferral or extension

You may be able to defer this exam.

Journal Club Participation

  • In-person
Mode
Activity/ Performance, Written
Category
Participation/ Student contribution
Weight
5%
Due date

31 July 23 - 27 Oct 23

Learning outcomes
L01, L02, L03, L05

Task description

  • Journal Club Participation 5%: active participation in journal club discussions. To assess participation, each student will fill out a feedback form for the topic paper discussed during the journal club session (unless they are presenting in that session). All students should be prepared to contribute to the discussion of other students' presentations.
  • Further details of the assessment format and marking criteria will be provided on Blackboard during the semester.
  • This task has been designed to be challenging, authentic and complex. Whilst students may use AI technologies, successful completion of assessment in this course will require students to critically engage in specific contexts and tasks for which artificial intelligence will provide only limited support and guidance. A failure to reference AI use may constitute student misconduct under the Student Code of Conduct. To pass this assessment, students will be required to demonstrate detailed comprehension of their written submission independent of AI tools.

Submission guidelines

Deferral or extension

You may be able to apply for an extension.

Journal Club Oral Presentation

  • In-person
Mode
Oral
Category
Presentation
Weight
18%
Due date

31 July 23 - 27 Oct 23

Learning outcomes
L01, L02, L03, L04, L05

Task description

  • Each student will be assigned to a journal club, which will meet regularly. In these clubs, students will be asked to give an oral presentation on a topic paper to the remainder of the group. All students presenting will be marked by your journal club leader - criteria marking sheets used for marking will be supplied. The date of your presentation will be determined by negotiation with the journal club leader.
  • Oral Presentation 18%: All oral presentation marks will be moderated by the NEUR3002 course coordinator, to ensure equitable marking across all journal clubs. You will receive your oral presentation and journal participation mark after the moderation process, and prior to the end of semester examination.
  • Further details of the assessment format and marking criteria will be provided on Blackboard during the semester.
  • This task has been designed to be challenging, authentic and complex. Whilst students may use AI technologies, successful completion of assessment in this course will require students to critically engage in specific contexts and tasks for which artificial intelligence will provide only limited support and guidance. A failure to reference AI use may constitute student misconduct under the Student Code of Conduct. To pass this assessment, students will be required to demonstrate detailed comprehension of their written submission independent of AI tools.

Submission guidelines

Deferral or extension

You may be able to defer this exam.

End of Semester Exam

  • Identity Verified
  • In-person
  • Online
Mode
Written
Category
Examination
Weight
49%
Due date

End of Semester Exam Period

2/11/2024 - 16/11/2024

Learning outcomes
L01, L02, L05, L09, L11, L12, L13, L14, L15, L16

Task description

  • Short Answer and MCQ Questions on course materials in weeks 6-13 of the semester.
  • The exam will be a closed book invigilated exam held on campus, undertaken via the Inspera eAssessment platform. Students will be required to bring a laptop to the exam that meets the device requirements for Inspera. It is important that you check before the exam that your laptop meets the device requirements for using the Inspera Assessment platform. If you do not own a suitable laptop, you can borrow one from the Library. The Library website Get familiar with Inspera provides the latest information for students about using Inspera.  Further information about the exam will be provided on Blackboard, and practice opportunities will be available throughout the semester.
  • Have your UQ student ID card available for all your exams. 
  • This assessment task is to be completed in-person. The use of Artificial Intelligence (AI) tools will not be permitted. Any attempted use of AI may constitute student misconduct under the Student Code of Conduct .

Exam details

Planning time 10 minutes
Duration 90 minutes
Calculator options

No calculators permitted

Open/closed book Closed Book examination - no written materials permitted
Exam platform Inspera
Invigilation

Invigilated by Inspera

Submission guidelines

Deferral or extension

You may be able to defer this exam.

Course grading

Full criteria for each grade is available in the Assessment Procedure.

Grade Cut off Percent Description
1 (Low Fail) 0 - 29

Absence of evidence of achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment items of 0% - 29%.

2 (Fail) 30 - 44

Minimal evidence of achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment items of 30% - 44%.

3 (Marginal Fail) 45 - 49

Demonstrated evidence of developing achievement of course learning outcomes

Course grade description: A cumulative score for all intra-semester and end of semester assessment items of 45% - 49%.

4 (Pass) 50 - 64

Demonstrated evidence of functional achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment items of 50% - 64%.

5 (Credit) 65 - 74

Demonstrated evidence of proficient achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment items of 65% - 74%.

6 (Distinction) 75 - 84

Demonstrated evidence of advanced achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment items of 75% - 84%.

7 (High Distinction) 85 - 100

Demonstrated evidence of exceptional achievement of course learning outcomes.

Course grade description: A cumulative score for all intra-semester and end of semester assessment items of 85% - 100%.

Additional course grading information


Supplementary assessment

Supplementary assessment is available for this course.

Additional assessment information

School of Biomedical Sciences Assessment Guidelines

  • Assessment due dates and times listed are Brisbane local (AEST) time.ᅠ
  • Oral Presentations are not eligible for requests for re-mark because the assessment cannot be replicated or duplicated.
  • All assessment results will be available via the Blackboard site (learn.uq.edu.au) via My Grades.
  • If you require further feedback on your performance in examinations, you can email the Student and Academic Administration Team at sbms@enquire.uq.edu.au


Information on applying for an assessment extension can be found on the Applying for an extension website.

Information on applying for a deferred exam can be found on the Deferring an exam website.

Information on assessment re-mark requests can be found on the Querying a result website.

Learning resources

You'll need the following resources to successfully complete the course. We've indicated below if you need a personal copy of the reading materials or your own item.

Library resources

Find the required and recommended resources for this course on the UQ Library website.

Additional learning resources information

Most resources will be available on the course Blackboard under the "Resources" link but check with the specific lecturer or Journal Club Leader where appropriate. Resources consist of lecture handouts and recordings, Journal articles for the Journal Club tutorials, and references to text books or web addresses.

Learning activities

The learning activities for this course are outlined below. Learn more about the learning outcomes that apply to this course.

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Learning period Activity type Topic
Not scheduled
Tutorial

The Degenerating Brain journal club [John Lee]

Learning outcomes: L03, L04, L05, L11

Multiple weeks
Tutorial

The Thinking and Acting Brain [Mark Bellingham]

These will cover cortical function and control of movement by the nervous system

Learning outcomes: L03, L04, L05, L07

Tutorial

The Psychotic Brain journal club [Thomas Burne]

These journal clubs will investigate in depth the neurobiology of psychosis in humans and animal models, with an emphasis on schizophrenia and dysfunction of attentional and executive brain processes, by student presentations of relevant research papers followed by group discussion.

Learning outcomes: L03, L04, L05, L12

Tutorial

The Connected Brain journal club [Stefan Thor]

These journal clubs will investigate in depth at how the brain connectome develops, is studied and is involved in neurological disorders, by student presentations of relevant research papers followed by group discussion.

Learning outcomes: L03, L04, L05, L13

Tutorial

The Epileptic Brain [Karin Borges]

These will cover how and why the brain generates epilepsy

Learning outcomes: L03, L04, L05, L08

Tutorial

The Injured Brain journal club [Jana Vukovic]

These journal clubs will investigate in depth how the brain responds to injury, by student presentations of relevant research papers followed by group discussion.

Learning outcomes: L03, L04, L05, L09

Tutorial

The Periodic Brain [Oliver Rawashdeh]

These will cover how and why the brain generates periodic phenomena

Learning outcomes: L03, L04, L05, L16

Tutorial

The Immune Brain journal club [Peter Noakes]

These journal clubs will investigate in depth immune systems in the brain, by student presentations of relevant research papers followed by group discussion.

Learning outcomes: L03, L04, L05, L06

Tutorial

The Somatosensory Brain [Rodrigo Suarez]

These will cover how the nervous system processed somatosensory inputs

Learning outcomes: L03, L04, L05, L10

Tutorial

The Seeing Brain journal club [Ulrike Siebeck]

These journal clubs will cover visual processing by the nervous system, by student presentations of relevant research papers followed by group discussion.

Learning outcomes: L03, L04, L05, L14

Lecture

Introduction to NEUR3002 [Mark Bellingham]

Welcome to the course, course structure and assessment tasks

Lecture

Basic Brain Structures [Mark Bellingham]

The who, what and where of the brain - ridiculously simple brain anatomy I

Learning outcomes: L01, L02

Lecture

Basic Brain Structures [Mark Bellingham]

The who, what and where of the brain - ridiculously simple brain anatomy II

Learning outcomes: L01, L02

Lecture

The Thinking and Acting Brain [Mark Bellingham]

These lectures will describe the structure and function of the cortex, a brain area which is highly developed in man, and generates thoughts, memories, actions and other human attributes.
This first lecture will look at general cortical structure and function, including the canonical cortical circuit and functional cortical modules

Learning outcomes: L01, L02, L07

Lecture

The Thinking and Acting Brain [Mark Bellingham]

These lectures will describe the structure and function of the motor cortex, a brain area that controls voluntary motor actions, and the subcortical systems that underlie motor control.

Learning outcomes: L01, L02, L07

Lecture

The Thinking and Acting Brain [Mark Bellingham]

This lecture will look at the mirror neuron system in primates and man and its involvement in learning, emotion, language and the theory of mind

Learning outcomes: L01, L02, L07

Lecture

The Immune Brain [Peter Noakes]

These lectures will describe the neuroimmune systems in the brain and their role in healthy and diseased brains

Learning outcomes: L01, L02, L06

Lecture

The Immune Brain [Peter Noakes]

These lectures will describe the neuroimmune systems in the brain and their role in healthy and diseased brains

Learning outcomes: L01, L02, L06

Lecture

The Immune Brain [Peter Noakes]

These lectures will describe the neuroimmune systems in the brain and their role in healthy and diseased brains

Learning outcomes: L01, L02, L06

Lecture

The Somatosensory Brain [Rodrigo Suarez]

This lecture will examine the ways that the brain processes somatosensory inputs in cortex and subcortical areas

Learning outcomes: L01, L02, L10

Lecture

The Somatosensory Brain [Rodrigo Suarez]

This lecture will examine the ways that the brain processes somatosensory inputs in cortex and subcortical areas

Learning outcomes: L01, L02, L10

Lecture

The Epileptic Brain [Karin Borges]

This lecture will cover why the brain suffers from epilepsy, mechanisms of epileptic seizures, and treatments.

Learning outcomes: L01, L02, L08

Lecture

The Epileptic Brain [Karin Borges]

This lecture will cover why the brain suffers from epilepsy, the mechanisms of epileptic seizures, and treatments.

Learning outcomes: L01, L02, L08

Lecture

The Epileptic Brain [Karin Borges]

This lecture will cover why the brain suffers from epilepsy, the mechanisms of epileptic seizures, and treatments.

Learning outcomes: L01, L02, L08

Lecture

The Periodic Brain [Oliver Rawashdeh]

The brain has its own timekeeping system. These lectures will explore how the brain generates periodic regulation of brain and body functions.

Learning outcomes: L01, L02, L16

Lecture

The Periodic Brain [Oliver Rawashdeh]

The brain has its own timekeeping system. These lectures will explore how the brain generates periodic regulation of brain and body functions.

Learning outcomes: L01, L02, L16

Lecture

The Periodic Brain [Oliver Rawashdeh]

The brain has its own timekeeping system. These lectures will explore how the brain generates periodic regulation of brain and body functions.

Learning outcomes: L01, L02, L16

Lecture

The Injured Brain [Jana Vukovic]

This lecture will focus in more detail on cellular and molecular changes that occur in the CNS in response to injury and how they relate to failed or absent regeneration

Learning outcomes: L01, L02, L09

Lecture

The Injured Brain [Jana Vukovic]

This lecture will provide an up-to-date overview on research dedicated to promoting functional recovery and repair of the injured central nervous system as well as the challenges that are associated with these goals

Learning outcomes: L01, L02, L09

Lecture

The Injured Brain [Jana Vukovic]

These lectures will describe the effects of traumatic brain injury, including responses and research on repairing injured brain. The first lecture will focus on the etiology of CNS injury and provide an introduction into associated neuropathology

Learning outcomes: L01, L02, L09

Lecture

The Seeing Brain [Ulrike Siebeck]

Humans are visual creatures. These lectures will cover how vision occurs from the retina to cortical processing.

Learning outcomes: L01, L02, L14

Lecture

The Seeing Brain [Ulrike Siebeck]

Humans are visual creatures. These lectures will cover how vision occurs from the retina to cortical processing.

Learning outcomes: L01, L02, L14

Lecture

The Seeing Brain [Ulrike Siebeck]

Humans are visual creatures. These lectures will cover how vision occurs from the retina to cortical processing.

Learning outcomes: L01, L02, L14

Lecture

The Psychotic Brain [Thomas Burne]

These lectures will describe the neurobiology of psychotic states in humans and in preclinical animal models, with a focus on schizophrenia. The first lecture will review current understanding of the neurobiology of pyschosis

Learning outcomes: L01, L02, L12

Lecture

The Psychotic Brain [Thomas Burne]

This lecture looks at attentional processing and executive function in healthy and psychotic states.

Learning outcomes: L01, L02, L12

Lecture

The Psychotic Brain [Thomas Burne]

This lecture covers preclinical animal models with relevance to Schizophrenia

Learning outcomes: L01, L02, L12

Lecture

The Moody Brain [Gerhard Rammes]

How the brain modulates mood

Learning outcomes: L01, L02, L15

Lecture

The Moody Brain [Gerhard Rammes]

How the brain modulates mood

Learning outcomes: L01, L02, L15

Lecture

The Moody Brain [Gerhard Rammes]

How the brain modulates mood

Learning outcomes: L01, L02, L15

Lecture

The Connected Brain [Stefan Thor]

How the brain regulates connections. Basic principles of neuronal connectivity. Axon/dendrite pathfinding, and methods for studying axon/dendrite projections. Molecular genetic pathways underlying axon/dendrite pathfinding.

Learning outcomes: L01, L02, L13

Lecture

The Connected Brain [Stefan Thor]

How the brain regulates connections.Large-scale efforts aimed at resolving the mouse and human connectome.

Learning outcomes: L01, L02, L13

Lecture

The Connected Brain [Stefan Thor]

How the brain regulates connections. How defects in connectivity may underlie a number of human neurological disorders.

Learning outcomes: L01, L02, L13

Week 6

(26 Aug - 01 Sep)

Lecture

The Degenerating Brain [John Lee]

These lectures will cover the changes and mechanisms involved in neurodegenerative diseases affecting the brain

Learning outcomes: L01, L02, L11

Lecture

The Degenerating Brain [John Lee]

These lectures will cover the changes and mechanisms involved in neurodegenerative diseases affecting the brain

Learning outcomes: L01, L02, L11

Lecture

The Degenerating Brain [John Lee]

These lectures will cover the changes and mechanisms involved in neurodegenerative diseases affecting the brain

Learning outcomes: L01, L02, L11

Additional learning activity information

All tutorials will start in week 2 of the semester unless your tutorial leader advises you otherwise.

Policies and procedures

University policies and procedures apply to all aspects of student life. As a UQ student, you must comply with University-wide and program-specific requirements, including the:

Learn more about UQ policies on my.UQ and the Policy and Procedure Library.

School guidelines

Your school has additional guidelines you'll need to follow for this course: